Data for c57bl6 and balbc mice TCR were downloaded from 10x Genomics website as
shown in system.file('script/10XMouseTCR_v3_chem.R', package = 'CellaRepertorium').
Additional processing of these data is done in the vignette mouse_tcell_qc
and are serialized to serve as an examples for other vignettes and documentation.
data(contigs_qc)A data frame of 3399 contigs and 22 fields, all except 4 are originally defined in https://support.10xgenomics.com/single-cell-vdj/software/pipelines/latest/output/annotation#contig The following fields were defined ex post facto.
anno_file: Path to original csv file
pop: Mouse strain.
sample: An artificial "replicate" from the original data defined by subsampling with replacement
celltype: The putative cell type of the contig.