Guess the cell type of a contig from the chain ID

This function is likely dependent on annotations from 10X and may change or break as their pipeline changes.

guess_celltype(chain)

Arguments

chain

character which will be parsed to try to infer celltype

Value

contig table with celltype column

See also

crosstab_by_celltype()

Examples

data(ccdb_ex)
table(guess_celltype(ccdb_ex$contig_tbl$chain))
#> 
#> T_ab 
#> 1508